Publications

Johnson A, Gnyliukh N, Kaufmann WA, Narasimhan M, Vert G, Bednarek SY, Friml J. (2020) Experimental toolbox for quantitative evaluation of clathrin-mediated endocytosis in the plant model Arabidopsis. J Cell Sci. 133(15), jcs248062. DOI: 10.1242/jcs.248062 [PDF]

Kaneda M, van Oostende-Triplet C, Chebli Y, Testerink C, Bednarek SY, Geitmann A. (2019) Plant AP180 N-Terminal Homolog Proteins Are Involved in Clathrin-Dependent Endocytosis during Pollen Tube Growth in Arabidopsis thaliana. Plant Cell Physiol. 60(6), 1316-1330. DOI: 10.1093/pcp/pcz036 [PDF]

Reynolds GD, Wang C, Pan J, Bednarek SY. (2018) Inroads into Internalization: Five Years of Endocytic Exploration. Plant Physiol. 176(1), 208-218. DOI: 10.1104/pp.17.01117 PMCID: PMC5761813 [PDF]

Mayers JR, Hu T, Wang C, Cárdenas JJ, Tan Y, Pan J, Bednarek SY. (2017) SCD1 and SCD2 Form a Complex That Functions with the Exocyst and RabE1 in Exocytosis and Cytokinesis. Plant Cell 29(10), 2610-2625. DOI: 10.1105/tpc.17.00409 PMCID: PMC5774579 [PDF]

Nagel MK, Kalinowska K, Vogel K, Reynolds GD, Wu Z, Anzenberger F, Ichikawa M, Tsutsumi C, Sato MH, Kuster B, Bednarek SY, Isono E. (2017) Arabidopsis SH3P2 is an ubiquitin-binding protein that functions together with ESCRT-I and the deubiquitylating enzyme AMSH3. Proc Natl Acad Sci USA. 114(34), E7197-E7204. DOI: 10.1073/pnas.1710866114 PMCID: PMC5576839 [PDF]

Zhang Y, Yu Q, Jiang N, Yan X, Wang C, Wang Q, Liu J, Zhu M, Bednarek SY, Xu J, Pan J. (2017) Clathrin regulates blue light-triggered lateral auxin distribution and hypocotyl phototropism in Arabidopsis. Plant Cell Environ. 40(1), 165-176. DOI: 10.1111/pce.12854 [PDF]

Tinevez JY, Perry N, Schindelin J, Hoopes GM, Reynolds GD, Laplantine E, Bednarek SY, Shorte SL, Eliceiri KW. (2017) TrackMate: An open and extensible platform for single-particle tracking. Methods. 115, 80-90. DOI: 10.1016/j.ymeth.2016.09.016 [PDF]

Dejonghe W, Kuenen S, Mylle E, Vasileva M, Keech O, Viotti C, Swerts J, Fendrych M, Ortiz-Morea FA, Mishev K, Delang S, Scholl S, Zarza X, Heilmann M, Kourelis J, Kasprowicz J, Nguyen le SL, Drozdzecki A, Van Houtte I, Szatmári AM, Majda M, Baisa G, Bednarek SY, Robert S, Audenaert D, Testerink C, Munnik T, Van Damme D, Heilmann I, Schumacher K, Winne J, Friml J, Verstreken P, Russinova E. (2016) Mitochondrial uncouplers inhibit clathrin-mediated endocytosis largely through cytoplasmic acidification. Nat Commun. 7, 11710. DOI: 10.1038/ncomms11710 PMCID: PMC4899852 [PDF]

Wang C, Hu T, Yan X, Meng T, Wang Y, Wang Q, Zhang X, Gu Y, Sánchez-Rodríguez C, Gadeyne A, Lin J, Persson S, Van Damme D, Li C, Bednarek SY, Pan J. (2016) Differential Regulation of Clathrin and Its Adaptor Proteins during Membrane Recruitment for Endocytosis, Plant Physiol. 171(1), 215-229. DOI: 10.1104/pp.15.01716 PMCID: PMC4854679 [PDF]

Smith JM, Leslie ME, Robinson SJ, Korasick DA, Zhang T, Backues SK, Cornish PV, Koo AJ, Bednarek SY, Heese A. (2014) Loss of Arabidopsis thaliana Dynamin-Related Protein 2B reveals separation of innate immune signaling pathways. PLoS Pathog. 10(12), e1004578. DOI: 10.1371/journal.ppat.1004578 PMCID: PMC4270792 [PDF]

Galva C, Kirik V, Lindeboom JJ, Kaloriti D, Rancour DM, Hussey PJ, Bednarek SY, Ehrhardt DW, Sedbrook JC. (2014) The microtubule plus-end tracking proteins SPR1 and EB1b interact to maintain polar cell elongation and directional organ growth in Arabidopsis. Plant Cell. 26(11), 4409-4425. DOI: 10.1105/tpc.114.131482 PMCID: PMC4277225 [PDF]

Frescatada-Rosa M, Stanislas T, Backues SK, Reichardt I, Men S, Boutté Y, Jürgens G, Moritz T, Bednarek SY, Grebe M. (2014) High lipid order of Arabidopsis cell-plate membranes mediated by sterol and DYNAMIN-RELATED PROTEIN1A function. Plant J. 80(5), 745-757. DOI: 10.1111/tpj.12674 PMCID: PMC4280860 [PDF]

Roschzttardtz H, Paez-Valencia J, Dittakavi T, Jali S, Reyes FC, Baisa G, Anne P, Gissot L, Palauqui JC, Masson PH, Bednarek SY, Otegui MS. (2014) The VASCULATURE COMPLEXITY AND CONNECTIVITY gene encodes a plant-specific protein required for embryo provasculature development. Plant Physiol. 166(2), 889-902. DOI: 10.1104/pp.114.246314 PMCID: PMC4213116 [PDF]

Reynolds GD, August B, Bednarek SY. (2014) Preparation of enriched plant clathrin-coated vesicles by differential and density gradient centrifugation. Methods Mol Biol. 1209, 163-177. DOI: 10.1007/978-1-4939-1420-3_13 [PDF]

Gadeyne A, Sánchez-Rodríguez C, Vanneste S, Di Rubbo S, Zauber H, Vanneste K, Van Leene J, De Winne N, Eeckhout D, Persiau G, Van De Slijke E, Cannoot B, Vercruysse L, Mayers JR, Adamowski M, Kania U, Ehrlich M, Schweighofer A, Ketelaar T, Maere S, Bednarek SY, Friml J, Gevaert K, Witters E, Russinova E, Persson S, De Jaeger G, Van Damme D. (2014) The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants. Cell. 156(4), 691-704. DOI: 10.1016/j.cell.2014.01.039 [PDF]

McMichael CM, Reynolds GD, Koch LM, Wang C, Jiang N, Nadeau J, Sack FD, Gelderman MB, Pan J, Bednarek SY. (2013) Mediation of clathrin-dependent trafficking during cytokinesis and cell expansion by Arabidopsis stomatal cytokinesis defective proteins. Plant Cell. 25(10), 3910-3925. DOI: 10.1105/tpc.113.115162 PMCID: PMC3877817 [PDF]

Baisa GA, Mayers JR, Bednarek SY. (2013) Budding and braking news about clathrin-mediated endocytosis. Curr Opin Plant Biol. 16(6), 718-725. DOI: 10.1016/j.pbi.2013.09.005 [PDF]

Sauer M, Delgadillo MO, Zouhar J, Reynolds GD, Pennington JG, Jiang L, Liljegren SJ, Stierhof YD, De Jaeger G, Otegui MS, Bednarek SY, Rojo E. (2013) MTV1 and MTV4 encode plant-specific ENTH and ARF GAP proteins that mediate clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network. Plant Cell. 25(6), 2217-2235. DOI: 10.1105/tpc.113.111724 PMCID: PMC3723622 [PDF]

Wang C, Yan X, Chen Q, Jiang N, Fu W, Ma B, Liu J, Li C, Bednarek SY, Pan J. (2013) Clathrin light chains regulate clathrin-mediated trafficking, auxin signaling, and development in Arabidopsis. Plant Cell. 25(2), 499-516. DOI: 10.1105/tpc.112.108373 PMCID: PMC3608774 [PDF]

Donohoe BS, Kang BH, Gerl MJ, Gergely ZR, McMichael CM, Bednarek SY, Staehelin LA. (2013) Cis-Golgi cisternal assembly and biosynthetic activation occur sequentially in plants and algae. Traffic. 14(5), 551-567. DOI: 10.1111/tra.12052 PMCID: PMC3622843 [PDF]

McMichael CM, Bednarek SY. (2013) Cytoskeletal and membrane dynamics during higher plant cytokinesis. New Phytol. 197(4), 1039-1057. DOI: 10.1111/nph.12122 [PDF]

Mravec J, Petrášek J, Li N, Boeren S, Karlova R, Kitakura S, Pařezová M, Naramoto S, Nodzyński T, Dhonukshe P, Bednarek SY, Zažímalová E, de Vries S, Friml J. (2011) Cell plate restricted association of DRP1A and PIN proteins is required for cell polarity establishment in Arabidopsis. Curr Biol. 21(12), 1055-1060. DOI: 10.1016/j.cub.2011.05.018 [PDF]

Backues SK, Korasick DA, Heese A, Bednarek SY. (2010) The Arabidopsis dynamin-related protein2 family is essential for gametophyte development. Plant Cell. 22(10), 3218-3231. DOI: 10.1105/tpc.110.077727 PMCID: PMC2990125 [PDF]

Robert S, Kleine-Vehn J, Barbez E, Sauer M, Paciorek T, Baster P, Vanneste S, Zhang J, Simon S, Čovanová M, Hayashi K, Dhonukshe P, Yang Z, Bednarek SY, Jones AM, Luschnig C, Aniento F, Zažímalová E, Friml J. (2010) ABP1 mediates auxin inhibition of clathrin-dependent endocytosis in Arabidopsis. Cell. 143(1), 111-121. DOI: 10.1016/j.cell.2010.09.027 PMCID: PMC3503507 [PDF]

Rancour DM, Backues SK, Bednarek SY. (2010) Protein antigen expression in Escherichia coli for antibody production. Methods Mol Biol. 657, 3-20. DOI: 10.1007/978-1-60761-783-9_1 [PDF]

Bednarek SY, Backues SK. (2010) Plant dynamin-related protein families DRP1 and DRP2 in plant development. Biochem Soc Trans. 38(3), 797-806. DOI: 10.1042/BST0380797 PMCID: PMC7898460 [PDF]

Korasick DA, McMichael C, Walker KA, Anderson JC, Bednarek SY, Heese A. (2010) Novel functions of Stomatal Cytokinesis-Defective 1 (SCD1) in innate immune responses against bacteria. J Biol Chem. 285(30), 23342-2350. DOI: 10.1074/jbc.M109.090787 PMCID: PMC2906326 [PDF]

Backues SK, Bednarek SY. (2010) Arabidopsis dynamin-related protein 1A polymers bind, but do not tubulate, liposomes. Biochem Biophys Res Commun. 393(4), 734-739. DOI: 10.1016/j.bbrc.2010.02.070 PMCID: PMC2874938 [PDF]

Park S, Rancour DM, Bednarek SY. (2008) In planta analysis of the cell cycle-dependent localization of AtCDC48A and its critical roles in cell division, expansion, and differentiation. Plant Physiol. 148(1), 246-258. DOI: 10.1104/pp.108.121897 PMCID: PMC2528134 [PDF]

Konopka CA, Backues SK, Bednarek SY. (2008) Dynamics of Arabidopsis dynamin-related protein 1C and a clathrin light chain at the plasma membrane. Plant Cell. 20(5), 1363-1380. DOI: 10.1105/tpc.108.059428 PMCID: PMC2438457 [PDF]

Konopka CA, Bednarek SY. (2008) Comparison of the dynamics and functional redundancy of the Arabidopsis dynamin-related isoforms DRP1A and DRP1C during plant development. Plant Physiol. 147(4), 1590-1602. DOI: 10.1104/pp.108.116863 PMCID: PMC2492646 [PDF]

Backues SK, Konopka CA, McMichael CM, Bednarek SY. (2007) Bridging the divide between cytokinesis and cell expansion. Curr Opin Plant Biol. 10(6), 607-615. DOI: 10.1016/j.pbi.2007.08.009 [PDF]

Konopka CA, Bednarek SY. (2007) Variable-angle epifluoresence microscopy: a new way to look at protein dynamics in the plant cell cortex. Plant. J. 53(1), 186-196. DOI: 10.1111/j.1365-313X.2007.03306.x [PDF]

Park S, Rancour DM, Bednarek SY. (2007) Protein domain-domain interactions and requirements for the negative regulation of Arabidopsis CDC48/P97 by the Plant Ubiquitin Regulatory X (UBX) Domain-containing protein, PUX1. J. Biol. Chem 282(8), 5217-5224. DOI: 10.1074/jbc.M609042200 [PDF]

Han BW, Bingman CA, Mahnke DK, Bannen RM, Bednarek SY, Sabina RL, Phillips GN Jr. (2006) Membrane association, mechanism of action, and structure of Arabidopsis embryonic factor 1 (FAC1) J Biol Chem. 281(21), 14939-14947. DOI: 10.1074/jbc.M513009200 [PDF]

Konopka CA, Schleede JB, Skop AR, Bednarek SY. (2006) Dynamin and cytokinesis. Traffic. 7(3), 239-247. DOI: 10.1111/j.1600-0854.2006.00385.x PMCID: PMC3654675 [PDF]

Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN Jr, Markley JL, Sussman MR. (2005) Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. Proceedings of the National Academy of Sciences USA. 102(12), 4453-8. DOI: 10.1073/Pnas.0408203102 [PDF]

Rancour DM, Park S, Knight SD, Bednarek SY. (2004) Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J Biol Chem. 297(52), 54264-54274. DOI: 10.1074/jbc.M405498200 [PDF]

Carter CJ, Bednarek SY, Raikhel NV. (2004) Membrane trafficking in plants: new discoveries and approaches. Curr Opin Plant Biol. 7(6), 7001-7007. DOI: 10.1016/j.pbi.2004.09.016 [PDF]

Preuss ML, Serna J, Falbel TG, Bednarek SY, Nielsen E. (2004) The Arabidopsis Rab GTPase RabA4b localizes to the tips of growing root hair cells. Plant Cell. 16(6), 1589-1603. DOI: 10.1105/tpc.021634 PMCID: PMC490048 [PDF]

Hong Z, Bednarek SY, Blumwald E, Hwang I, Jurgens G, Menzel D, Osteryoung KW, Raikhel NV, Shinozaki K, Tsutsumi N, Verma DP. (2003) A unified nomenclature for Arabidopsis dynamin-related large GTPases based on homology and possible functions. Plant Mol Biol. 53(3), 261-265. DOI: 10.1023/b:plan.0000007000.29697.81 [PDF]

White J, Bednarek S. (2003) Cytokinesis: GAGs form the walls that separate our parts. Current Biology. 13(18), R717-718. DOI: 10.1016/J.Cub.2003.08.048 [PDF]

Falbel TG, Koch LM, Nadeau JA, Segui-Simarro JM, Sack FD, Bednarek SY. (2003) SCD1 is required for cytokinesis and polarized cell expansion in Arabidopsis thaliana [corrected]. Development. 130(17), 4011-4024. DOI: 10.1242/dev.00619 [PDF]

Kang BH, Rancour DM, Bednarek SY. (2003) The dynamin-like protein ADL1C is essential for plasma membrane maintenance during pollen maturation. Plant J. 35(1), 1-15. DOI: 10.1046/j.1365-313x.2003.01775.x [PDF]

Kang BH, Busse JS, Bednarek SY. (2003) Members of the Arabidopsis dynamin-like gene family, ADL1, are essential for plant cytokinesis and polarized cell growth. Plant Cell. 15(4), 899-913. DOI: 10.1105/tpc.009670 PMCID: PMC524700 [PDF]

Rancour DM, Dickey CE, Park S, Bednarek SY. (2002) Characterization of AtCDC48. Evidence for multiple membrane fusion mechanisms at the plane of cell division in plants. Plant Physiol. 130(3), 1241-1253. DOI: 10.1104/pp.011742 PMCID: PMC166645 [PDF]

Bednarek SY, Falbel TG. (2002) Membrane trafficking during plant cytokinesis. Traffic. 3(9),621-629. DOI: 10.1034/j.1600-0854.2002.30904.x [PDF]

Zheng H, Bednarek SY, Sanderfoot AA, Alonso J, Ecker JR, Raikhel NV. (2002)
NPSN11 is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE. Plant Physiol. 129(2), 530-539. DOI: 10.1104/pp.003970 PMCID: PMC161670 [PDF]

Otegui MS, Mastronarde DN, Kang BH, Bednarek SY, Staehelin LA. (2001) Three-dimensional analysis of syncytial-type cell plates during endosperm cellularization visualized by high resolution electron tomography. Plant Cell. 13(9), 2033-2051. DOI: 10.1105/TPC.010150 PMCID: PMC139450 [PDF]

Kang BH, Busse JS, Dickey C, Rancour DM, Bednarek SY. (2001) The arabidopsis cell plate-associated dynamin-like protein, ADL1Ap, is required for multiple stages of plant growth and development. Plant Physiol. 126(1), 47-68. DOI: 10.1104/pp.126.1.47 PMCID: PMC102281 [PDF]

Matsuoka K, Bednarek SY. (1998) Protein transport within the plant cell endomembrane system: an update. Curr Opin Plant Biol. 1(6), 463-469. DOI: 10.1016/s1369-5266(98)80036-8 [PDF]

Matsuoka K, Orci L, Amherdt M, Bednarek SY, Hamamoto S, Schekman R, Yeung T. (1998) COPII-coated vesicle formation reconstituted with purified coat proteins and chemically defined liposomes. Cell. 93(2), 263-275. DOI: 10.1016/s0092-8674(00)81577-9 [PDF]

Bednarek SY, Orci L, Schekman R. (1996) Traffic COPs and the formation of vesicle coats. Trends Cell Biol. 6(12), 468-473. DOI: 10.1016/0962-8924(96)84943-9 [PDF]

Bednarek SY, Ravazzola M, Hosobuchi M, Amherdt M, Perrelet A, Schekman R, Orci L. (1995) COPI- and COPII-coated vesicles bud directly from the endoplasmic reticulum in yeast. Cell. 83(7), 1183-1196. DOI: 10.1016/0092-8674(95)90144-2 [PDF]

Bednarek SY, Reynolds TL, Schroeder M, Grabowski R, Hengst L, Gallwitz D, Raikhel NV. (1994) A small GTP-binding protein from Arabidopsis thaliana functionally complements the yeast YPT6 null mutant. Plant Physiol. 104(2), 591-596. DOI: 10.1104/pp.104.2.591 PMCID: PMC159235 [PDF]

Dombrowski JE, Schroeder MR, Bednarek SY, Raikhel NV. (1993) Determination of the functional elements within the vacuolar targeting signal of barley lectin. Plant Cell. 5(5), 587-596. DOI: 10.1105/tpc.5.5.587 PMCID: PMC160296 [PDF]

Bednarek SY, Raikhel NV. (1992) Intracellular trafficking of secretory proteins. Plant Mol Biol. 20(1), 133-150. DOI: 10.1007/BF00029156 [PDF]

Bednarek SY, Raikhel NV. (1991) The barley lectin carboxyl-terminal propeptide is a vacuolar protein sorting determinant in plants. Plant Cell. 3(11), 1195-1206. DOI: 10.1105/tpc.3.11.1195. PMCID: PMC160086 [PDF]

Bednarek SY, Wilkins TA, Dombrowski JE, Raikhel NV. (1990) A carboxyl-terminal propeptide is necessary for proper sorting of barley lectin to vacuoles of tobacco. Plant Cell. 2(12), 1145-1155. DOI: 10.1105/tpc.2.12.1145. PMCID: PMC159962 [PDF]

Wilkins TA, Bednarek SY, Raikhel NV. (1990) Role of propeptide glycan in post-translational processing and transport of barley lectin to vacuoles in transgenic tobacco. Plant Cell. 2(4), 301-313. DOI: 10.1105/tpc.2.4.301. PMCID: PMC159887 [PDF]

Strabala TJ, Bednarek SY, Bertoni G, Amasino RM. (1989) Isolation and characterization of an ipt gene from the Ti plasmid Bo542. Mol Gen Genet. 216(2-3), 388-394. DOI: 10.1007/BF00334380 [PDF]

Weretilnyk EA, Bednarek S, McCue KF, Rhodes D, Hanson AD. (1989) Comparative biochemical and immunological studies of the glycine betaine synthesis pathway in diverse families of dicotyledons. Planta. 178, 342-52. DOI: 10.1007/Bf00391862 [PDF]

Raikhel NV, Bednarek SY, Wilkins TA. (1988) Cell-type-specific expression of a wheat-germ agglutinin gene in embryos and young seedlings of Triticum aestivum. Planta. 176(3), 406-414. DOI: 10.1007/BF00395422 [PDF]